Command-line interface tools

panopticon.commands.bookem.gene_position_augmentation_main(loomfile)

Parameters

loomfile –

panopticon.commands.bookem.gene_signature_wizard_main(loomfile=None, signaturefile=None)

Parameters

• loomfile – (Default value = None)

• signaturefile – (Default value = None)

panopticon.commands.multireference_dna_correspondence.multireference_dna_correspondence_main(loomfile, queries, segmentations, stratifyby=None, output=None, modulescore_signature=None)

Parameters

• loomfile –

• queries –

• segmentations –

• stratifyby – (Default value = None)

• output – (Default value = None)

• modulescore_signature – (Default value = None)

panopticon.commands.windowed_mean_expression_clustering.windowed_mean_expression_clustering_main(loomfile, patient, cell_type, complexity_cutoff, n_clusters, figure_output, raw_data_output)

Parameters

• loomfile –

• patient –

• cell_type –

• complexity_cutoff –

• n_clusters –

• figure_output –